I am not sure it is the best, but I do recommend this one-shot
http://www.mangago.me/read-manga/kosha_ura_no_natsu/bt/276470/Ch0/2/
http://www.mangago.me/read-manga/kowagaranai_de_soba_ni_ite/ this one (=・ω・=)
It's hard to choose one, but I guess this is a winner
http://www.mangago.me/read-manga/even_just_the_tip/
Some more that I liked
http://www.mangago.me/read-manga/atokata/
http://www.mangago.me/read-manga/oniisan_to_yobinasai/
http://www.mangago.me/read-manga/ushirosugata_no_natsu_no_neko/
http://www.mangago.me/read-manga/dark_road/
This one....this one will always be my favorite! *drool*
http://www.mangago.me/read-manga/kitsu_ka_nu_shisen/
The cutest ε=ε=(ノ≧∇≦)ノ
http://www.mangago.me/read-manga/xxx_allergy/
That is definitely one of the best! I support this!!!
To all my fellow fujoshis and fudanshis, please give me your best one-shot yaoi manga ever!!! ^0^