This is just my personal theory so it could be wrong but I think its all about power dynamics. J is unbeliveably more powerful than Makoto and you can see that he makes the effort to remind Makoto of that fact (like being raped by Fjord, having him collect his father's soul, etc.) I think since J is so powerful, the only way to be on equal standing with him is to destroy him.

Dont really understand. Can someone give me a summary?